Carry-out vs Ship from Warehouse

Shopify Partner
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I am working with a client who uses the POS with Shopify premium. I am looking for a way to specify, at a line item level, whether a customer was able to actually take the item home from the store, or it needs to be shipped from the warehouse. More detail on the use case:


A customer walks into a store and purchases 3 items; 2 items are in stock at the store, however, the third must be shipped from the retailer's warehouse because it is either unavailable at this location or requires assembly before shipping.  


How can we customize the system to allow us to specify at the time of sale if part of an order must be forwarded on to the warehouse for fulfillment?