I trust you mean subscription based payment gateways?
Yes, It can be done.
Could you let us know country you're based? so can suggest available options.
Based on your payment gateway option you select, you can provide option for your customers to checkout using their credit/debit card or bank details to create a subscription package or a DD for recurring payments .
For UK there are few gateways available with subscription facilities.
i.e PayPal, Stripe or through GoCardless (Bank DD).
But unfortunately they are not natively connected to Shopify directly. only through apps.
But we are happy to assist you integrating any of above gateway with subscription chekout facility for your store, as a private integration.
DM me for more details.