Inventory Management App using SKU, Spreadsheet Capability

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I am working with a company that has their own Shopify app, and they also have spreadsheets that, unfortunate for me, have more information than their app imports into my store. I will be processing over 20k products.

There are three columns of attributes I need to correctly use the information given to me about the products. Their app and spreadsheet both have SKU's assigned to each product, I would like to add these three columns of attributes to the products using their SKU versus Shopify's import method of product ID assigned by Shopify.

Thanks in advance!