Shopify + Stripe

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I am new to shopify and I am trying to setup stripe payments. I am about to connect our stripe account (which is currently being used by our live system via stripe api) to our new shopify account but we would like to be sure that it would not affect our current system specifically in accepting orders. 

Would we be able to run test payments to our stripe account using shopify without messing up our live site?

Can anyone please confirm this? Thanks