POS pricing over riding discounted online prices

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We have just launched a shopify site that links in with our tower POS system. It brings across all relevant stock information and pricing fine and updates every 15 minutes, the problem is every time i introduce a special or compare at price online it gets corrected when the next update is processed.


I can amend the price in my POS system so that our physical store is different to our online site but this does't notify the online customer that the product is on sale or discounted.


Appreciate any help.