ERROR: missing template "layout/theme.liquid" when it's there.

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Hi guys, my name is Bao, I'm a newbie to Shopify so I wanted to seek for your help.

I used a php code to generated and zipped it into a new Shopify, everything went small until I try to upload the theme to my store.



I have the message error missing template "layout/theme.liquid.

I went back to check in the .zip folder and I can see the file is there, it's not missing at all.

I tried to extract the theme, and zipped it again manually and retry to upload again, this time it work no problem. I was hoping that someone can help me with the problem as I don't know what I did wrong.