Inventory Tracking Problem

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I'm about to have a breakdown here. I've updated all my inventory 6 SIX TIMES with "track inventory".  Ive tried doing it through individual product editing and bulk editing. I've saved it waited for it to save before moving on and literally every morning for the last two weeks when I check, there are certain products (in multiple random categories) that have gone back to "don't check inventory". Is anyone else having this problem? I use SkuIQ to link my shopify and square inventory and shopify told me to reach out to them and I have but they say the problem is not on their end. Please help!!!