Script and CSS Assets in Store Copy

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I created a store copy for a client. The store copy will be the development site. Unfortunately, I can't have the same URL in dev store as the client's store. This is leading to problems with assest from their store. 

For example

<script type="text/javascript" async="" src=""></script>

The store URL of the back up store is

This is causing all the assets that have the Shopify store parameter URL in the src to 404. 

How can I fix this? Is there a way to create a store backup using the same URL as my client's store?