Themekit and App Sectionsanywhere

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Hello Shopify Forum,

i am building a shop with the sectionsanywhere app and am also creating my own custom theme.
I am using themekit and a deployment process to ship theme files to my shop.
Everytime this process is done, content that has been created with the sectionsanywhere app gets deleted on every page.
I tried fix this issue by ignoring every sectionsanywhere file (atb) and page templates.

Anybody encountered this problem before?
Do i need to add more rules for themekit or put a setting somewhere?

Thank you for your help