Accounting for Owner Purchase of At-Cost Goods

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We don't want to run owner purchases of inventory at cost through Shopify because of the fees they charge for each purchase. What is the best way to record the at-cost selling of products to owners? Is a spreadsheet of the numbers good enough, or how do we categorize those deposits in QBO? It's not an owner investment, it's purely for goods sold at cost. We use Finale for inventory and a2x to map sales to QBO. 

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