Can I change my AWS Route 53 domain from shop.domain.com to domain.com?

I registered my domain names through AWS route 53. It seemed that the only way I would be able to use the domain on Shopify was by adding “shop” or another prefix before my domain name ( ex: shop.domain.com) when I only wanted to just use domain.com. Frustrated, I just added the shop and now am pending SSL. Will I be able to change that or do I have to keep shop.domain.com?

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