Charging Wholesale Tax

Topic summary

A merchant is seeking a way to apply different tax rates to wholesale orders versus retail orders on Shopify without upgrading to a separate wholesale store. They currently create manual invoices with discounts for wholesale customers but need to charge a distinct tax rate for these orders only, not at the product level.

Current Challenge:

  • Cannot apply customer-specific tax rates without affecting retail pricing
  • Manual invoice process doesn’t support differential taxation
  • Standard Shopify lacks built-in wholesale tax customization

Proposed Solution:
One respondent suggests using SellifyCRM, a third-party B2B platform that syncs with Shopify for fulfillment while providing:

  • Individual customer tax rules
  • Resale certificate storage for tax-exempt accounts
  • Full wholesale management features (CRM, quotes, reporting)

The discussion remains open with no native Shopify solution identified for this tax configuration need.

Summarized with AI on November 2. AI used: claude-sonnet-4-5-20250929.

I have a shopify store, but not the upgraded account where I can have a separate store for wholesalers. I have created invoices for my wholesale orders and applied the appropriate discount. I need to tax the wholesale orders at a different rate than retail orders. Can I turn off sales tax, but apply a different tax rate to specific orders? I don’t want to change the tax rate per product since it only applies to wholesale customers, not to retail customers.

Shopify is great at retail but there are many wholesale gaps. There are many apps that try to fix pricing or other one off concerns but fall short in other areas.

If you’re still looking for a solution check out SellifyCRM which syncs products/orders with Shopify so you can continue to do fulfilment there but provides a full B2B experience purpose built for wholesale sales opposed to retail. You can setup individual tax rules for customers and even collect their resale certificates to store on their accounts if they are tax exempt. No theme updates required and no cludging together a series of apps. Connect Sellify to your store and provide wholesale accounts your B2B link and it just works. Plus it offers a full CRM, intuified reporting, custom quotes, etc. Everything you need to run a successful wholesale business. We have different plans tailored to the size of your business.

If you have any questions or would like a demo feel free to message me.