Yeah so the order is split after sale as the bundle components are not displayed in checkout.
We actually do some accounting integrations so the guys have some experience in data flows but no Quickbooks unfortunately. The bundling up items is probably the easy part the issue comes with how to manage orders into Quickbooks and then inventory levels of these bundles.
You can email me at tom@channelup.io and we can schedule a chat. Keep in mind we are in Brisbane Australia so time zone issues!