I had an item that was sized incorrectly when the customer ordered it. I notified them, they agreed to pay $17 less for a smaller size. I accepted payment for the full amount minus $17 and Shopify’s help-bot told me the order would go away at the end of the month.
But now the order shows as “partially paid” and I constantly have a “1” notification on my orders. If I say “Collect Payment”, Shopify will think I have collected the $17 and my accounting will be off. I also don’t want to do anything that will send any kind of notification to the customer.