I am looking for a “subscription” app for our subscription box program that works on a schedule. This box is the $99 three times a year and once a year it is $129 (it’s a more premium box at Christmas time).
Is there an app that will allow a payment schedule that charges subscribers on particular days on a quarterly basis and allow for payments to be a specified amount depending on which month in the program it is?
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You can only do this by manually updating subscriptions.
Check the third party solution easy SHOPIFY STRIPE CHECKOUT, that also supports subscriptions.
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Hey @megannakazawa
You can use RecurrinGO to create quarterly subscription box program with different pricing.

Here is the app link on Shopify: RecurrinGO! Subscriptions App - Shopify Subscriptions App RecurrinGO! - Best Choice 2025 | Shopify App Store
With RecurrinGO, you can set up a prepaid subscription that charges customers quarterly (every 3 months) for your $99 boxes. For the premium $129 Christmas box, you’d create a separate subscription rule with annual billing.
Here’s how to set it up:
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Create a subscription rule (automatic charges)
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Select “Prepaid” as the subscription type
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Set “Deliver every: 1 Month” (for monthly deliveries)
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Set “Charge every: 3 Deliveries” (for quarterly billing)
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Create a second rule for your annual premium box with different pricing
You can also choose specific charge dates (1-31 of the month).
If you need any help, you can write a dm to me.
Hope this helps 

Hello @megannakazawa,
I hope you’re doing well!
I wanted to let you know that manually renewing subscription boxes can easily be managed this month using AiTrillion. With the same app, you can also display subscription boxes on the collection page and send automated emails with reminders for monthly subscription renewals.
Additionally, the app supports all payment methods, and you can import customers as needed.
I’d also like to highlight that AiTrillion includes loyalty rewards, reviews, and many other features—all within a single plan. You can access all reports in one centralized place as well.