It is showing Deprecated API calls for app/uninstalled Endpoint, but we are not using any version number for Webhook. Any idea how to resolve this?
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Did this show up for you rcently?
I was having the same problem. I had been using an older version of the webhook version within the last 30 days. The warning eventually went away after some time. So you might just need to wait a few days.
I think that the issue has to do with the past registration of webhooks using older APIs.
When the webhooks are invoked it will also trigger this warning regardless of the current API usage.
This is a bug in Shopify’s API. I’ve tried to contact them a couple of times regarding that and have always replied with some nonsense info bot (Hannah | Shopify Partner Support), so relying on Shopify is a no-go.
You can just fix that by re-registering all your shops’ webhooks.